new(github.com/OpenGene/fastp): fastp 1.3.5#13461
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Ultra-fast FASTQ preprocessor (C++). isa-l+libdeflate+highway+zlib; gcc14 build + libstdcxx runtime; inline fixture.
Remove unnecessary dependency and streamline test commands.
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Adds fastp — all-in-one ultra-fast FASTQ preprocessing (QC, adapter/quality trimming, filtering). C++/Makefile. Now that its deps landed: links
github.com/intel/isa-l+github.com/ebiggers/libdeflate+google.com/highway+ zlib (resolved via their.pcfiles, so pkg-config is a build dep).CXX=c++,PREFIXinstall var (theinstalltarget doesn't mkdir, so the recipe does). On linux: gcc 14 build +gnu.org/gcc/libstdcxxruntime. Verified on linux/arm64:lddshows libisal/libdeflate/libhwy/libstdc++,fastp --version-> 1.3.5, and a real preprocess of an inline-fixture FASTQ.